Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate-semialdehyde dehydrogenase | BEN53_RS20930 | Not Available | Negative | 4099536 - 4100639 | 40078.3 |
| naat family transporter yhgn | BEN53_RS20935 | Not Available | Positive | 4100831 - 4101424 | 21491.9 |
| dna-processing protein dpra | BEN53_RS20940 | Not Available | Negative | 4101470 - 4102765 | 46989.4 |
| recq family atp-dependent dna helicase | BEN53_RS20945 | Not Available | Negative | 4102672 - 4104768 | 77434.3 |
| gluconate transporter | BEN53_RS20950 | Not Available | Negative | 4104908 - 4106248 | 46418.9 |
| gluconokinase | BEN53_RS20955 | Not Available | Negative | 4106252 - 4106779 | 19433.3 |
| gluconate operon transcriptional repressor gntr | BEN53_RS20960 | Not Available | Negative | 4106918 - 4107913 | 36424.3 |
| quercetin 2,3-dioxygenase | BEN53_RS20965 | Not Available | Negative | 4108137 - 4108832 | 26280.8 |
| oxidoreductase | BEN53_RS20970 | Not Available | Negative | 4108955 - 4109992 | 38725.9 |
| n-acetyltransferase | BEN53_RS20980 | Not Available | Positive | 4110327 - 4110815 | 18850.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




