Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative adenosine monophosphate-protein transferase fic | BEN53_RS20560 | Not Available | Negative | 4017448 - 4018050 | 22941.4 |
| yhfg family protein | BEN53_RS20565 | Not Available | Negative | 4018040 - 4018207 | 6610.08 |
| peptidylprolyl isomerase a | BEN53_RS20570 | Not Available | Negative | 4018312 - 4018884 | 20432.5 |
| mfs transporter tsga | BEN53_RS20575 | Not Available | Positive | 4019155 - 4020336 | 43125.0 |
| nadph-nitrite reductase large subunit | BEN53_RS20580 | Not Available | Positive | 4020598 - 4023141 | 93112.6 |
| nitrite reductase small subunit nird | BEN53_RS20585 | Not Available | Positive | 4023138 - 4023464 | 12270.6 |
| nitrite transporter nirc | BEN53_RS20590 | Not Available | Positive | 4023589 - 4024395 | 28578.2 |
| siroheme synthase cysg | BEN53_RS20595 | Not Available | Positive | 4024414 - 4025787 | 49954.4 |
| yhfl family protein | BEN53_RS20600 | Not Available | Positive | 4026038 - 4026205 | 5819.16 |
| is30-like element isapl1 family transposase | BEN53_RS20605 | Not Available | Positive | 4026462 - 4027436 | 37701.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




