Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | BEN53_RS20240 | Not Available | Positive | 3976899 - 3978188 | 48292.2 |
| trk system potassium transporter trka | BEN53_RS20245 | Not Available | Positive | 3978210 - 3979586 | 50370.8 |
| large-conductance mechanosensitive channel protein mscl | BEN53_RS20250 | Not Available | Positive | 3979716 - 3980126 | 14957.7 |
| alternative ribosome-rescue factor arfa | BEN53_RS20255 | Not Available | Negative | 3980123 - 3980341 | 8213.95 |
| zn(2+)-responsive transcriptional regulator | BEN53_RS20260 | Not Available | Negative | 3980397 - 3980822 | 16180.4 |
| duf1992 domain-containing protein | BEN53_RS20265 | Not Available | Negative | 3980833 - 3981201 | 14026.6 |
| 50s ribosomal protein l17 | BEN53_RS20270 | Not Available | Negative | 3981308 - 3981691 | 14365.4 |
| dna-directed rna polymerase subunit alpha | BEN53_RS20275 | Not Available | Negative | 3981732 - 3982721 | 36513.9 |
| 30s ribosomal protein s4 | BEN53_RS20280 | Not Available | Negative | 3982747 - 3983367 | 23470.5 |
| 30s ribosomal protein s11 | BEN53_RS20285 | Not Available | Negative | 3983401 - 3983790 | 13845.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




