Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s ribosomal rna | Not Available | Not Available | Positive | 3968914 - 3970455 | Not Available |
| gamma carbonic anhydrase family protein | BEN53_RS20195 | Not Available | Positive | 3970928 - 3971482 | 20246.3 |
| duf1488 domain-containing protein | BEN53_RS20200 | Not Available | Negative | 3971458 - 3971715 | 9914.42 |
| shikimate dehydrogenase | BEN53_RS20205 | Not Available | Negative | 3971712 - 3972530 | 29327.3 |
| l-threonylcarbamoyladenylate synthase type 1 tsac | BEN53_RS20210 | Not Available | Negative | 3972535 - 3973107 | 20657.7 |
| type i dna topoisomerase | BEN53_RS20215 | Not Available | Negative | 3973112 - 3973654 | 19845.9 |
| duf494 family protein smg | BEN53_RS20220 | Not Available | Negative | 3973683 - 3974156 | 18483.2 |
| dna-protecting protein dpra | BEN53_RS20225 | Not Available | Negative | 3974128 - 3975252 | 40936.2 |
| peptide deformylase | BEN53_RS20230 | Not Available | Positive | 3975382 - 3975891 | 19343.6 |
| methionyl-trna formyltransferase | BEN53_RS20235 | Not Available | Positive | 3975906 - 3976853 | 34176.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




