Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sodium/pantothenate symporter | BEN53_RS20075 | Not Available | Positive | 3949449 - 3950900 | 51766.4 |
| 50s ribosomal protein l11 methyltransferase | BEN53_RS20080 | Not Available | Positive | 3950912 - 3951793 | 31878.8 |
| trna dihydrouridine synthase dusb | BEN53_RS20085 | Not Available | Positive | 3952122 - 3953087 | 35868.2 |
| dna-binding transcriptional regulator fis | BEN53_RS20090 | Not Available | Positive | 3953113 - 3953409 | 11240.6 |
| adenine-specific dna-methyltransferase | BEN53_RS20095 | Not Available | Positive | 3953495 - 3954379 | 33348.2 |
| duf2556 family protein | BEN53_RS20100 | Not Available | Positive | 3954463 - 3954642 | 7203.93 |
| multidrug efflux transporter transcriptional repressor acrs | BEN53_RS20105 | Not Available | Negative | 3954645 - 3955307 | 25132.6 |
| multidrug efflux rnd transporter periplasmic adaptor subunit acre | BEN53_RS20115 | Not Available | Positive | 3955706 - 3956863 | 41251.9 |
| multidrug efflux rnd transporter permease subunit acrf | BEN53_RS20120 | Not Available | Positive | 3956875 - 3959979 | 111398.0 |
| membrane protein | BEN53_RS20125 | Not Available | Positive | 3960232 - 3960453 | 7452.14 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




