Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase biotin carboxylase subunit | BEN53_RS20025 | Not Available | Positive | 3939187 - 3940536 | 49323.7 |
| aldose 1-epimerase family protein | BEN53_RS20030 | Not Available | Negative | 3940628 - 3941674 | 38648.7 |
| sugar kinase | BEN53_RS20035 | Not Available | Negative | 3941671 - 3942633 | 34801.6 |
| abc transporter permease | BEN53_RS20040 | Not Available | Negative | 3942655 - 3943644 | 35048.1 |
| sugar abc transporter atp-binding protein | BEN53_RS20045 | Not Available | Negative | 3943645 - 3945144 | 55096.1 |
| substrate-binding domain-containing protein | BEN53_RS20050 | Not Available | Negative | 3945205 - 3946095 | 31156.7 |
| tagatose bisphosphate family class ii aldolase | BEN53_RS20055 | Not Available | Negative | 3946131 - 3946985 | 31170.4 |
| deor/glpr family dna-binding transcription regulator | BEN53_RS20060 | Not Available | Positive | 3947327 - 3948157 | 30428.7 |
| sugar kinase | BEN53_RS20065 | Not Available | Positive | 3948189 - 3949124 | 34231.1 |
| yhdt family protein | BEN53_RS20070 | Not Available | Positive | 3949217 - 3949459 | 9154.31 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




