Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metalloprotease tldd | BEN53_RS19960 | Not Available | Negative | 3924127 - 3925572 | 51367.2 |
| asma2 domain-containing protein yhdp | BEN53_RS19965 | Not Available | Negative | 3925728 - 3929528 | 138980.0 |
| ribonuclease g | BEN53_RS19970 | Not Available | Negative | 3929596 - 3931065 | 55367.4 |
| nucleoside triphosphate pyrophosphatase yhde | BEN53_RS19975 | Not Available | Negative | 3931055 - 3931648 | 21405.6 |
| rod shape-determining protein mred | BEN53_RS19980 | Not Available | Negative | 3931657 - 3932145 | 18788.9 |
| rod shape-determining protein mrec | BEN53_RS19985 | Not Available | Negative | 3932145 - 3933248 | 39513.8 |
| rod shape-determining protein mreb | BEN53_RS19990 | Not Available | Negative | 3933314 - 3934357 | 36954.7 |
| rnase e specificity factor csrd | BEN53_RS20005 | Not Available | Negative | 3934662 - 3936602 | 73448.8 |
| mdr family oxidoreductase | BEN53_RS20010 | Not Available | Positive | 3936754 - 3937728 | 34640.9 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | BEN53_RS20020 | Not Available | Positive | 3938706 - 3939176 | 16688.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




