Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoprenoid biosynthesis glyoxalase elbb | BEN53_RS19790 | Not Available | Negative | 3889572 - 3890225 | 22982.9 |
| aerobic respiration two-component sensor histidine kinase arcb | BEN53_RS19795 | Not Available | Negative | 3890455 - 3892791 | 87988.0 |
| tigr01212 family radical sam protein | BEN53_RS19800 | Not Available | Negative | 3892887 - 3893816 | 34565.6 |
| glutamate synthase large subunit | BEN53_RS19815 | Not Available | Positive | 3894490 - 3898950 | 163292.0 |
| glutamate synthase subunit gltd | BEN53_RS19820 | Not Available | Positive | 3898963 - 3900381 | 52005.3 |
| pddexk nuclease domain-containing protein | BEN53_RS19825 | Not Available | Positive | 3900565 - 3901677 | 43047.6 |
| n-acetylneuraminate anomerase | BEN53_RS19830 | Not Available | Negative | 3901737 - 3902201 | 16992.6 |
| n-acetylmannosamine kinase | BEN53_RS19835 | Not Available | Negative | 3902198 - 3903073 | 29574.5 |
| n-acetylmannosamine-6-phosphate 2-epimerase | BEN53_RS19840 | Not Available | Negative | 3903070 - 3903759 | 24075.0 |
| sialic acid transporter nant | BEN53_RS19845 | Not Available | Negative | 3903807 - 3905297 | 53585.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




