Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | BEN53_RS19690 | Not Available | Negative | 3875002 - 3876261 | 44820.4 |
| bola family iron metabolism protein ibag | BEN53_RS19695 | Not Available | Negative | 3876316 - 3876570 | 9452.29 |
| lipid asymmetry maintenance protein mlab | BEN53_RS19700 | Not Available | Negative | 3876730 - 3877023 | 10679.0 |
| phospholipid-binding protein mlac | BEN53_RS19705 | Not Available | Negative | 3877023 - 3877658 | 23949.9 |
| outer membrane lipid asymmetry maintenance protein mlad | BEN53_RS19710 | Not Available | Negative | 3877677 - 3878228 | 19577.3 |
| lipid asymmetry maintenance abc transporter permease subunit mlae | BEN53_RS19715 | Not Available | Negative | 3878233 - 3879015 | 27893.1 |
| phospholipid abc transporter atp-binding protein mlaf | BEN53_RS19720 | Not Available | Negative | 3879023 - 3879832 | 29098.6 |
| calcium/sodium antiporter | BEN53_RS19725 | Not Available | Positive | 3880042 - 3881019 | 34756.9 |
| arabinose-5-phosphate isomerase kdsd | BEN53_RS19730 | Not Available | Positive | 3881033 - 3882019 | 35198.3 |
| 3-deoxy-manno-octulosonate-8-phosphatase kdsc | BEN53_RS19735 | Not Available | Positive | 3882040 - 3882606 | 20016.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




