Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| luciferase-like monooxygenase | BEN53_RS19540 | Not Available | Positive | 3843361 - 3844368 | 37098.4 |
| tryptophan permease | BEN53_RS19545 | Not Available | Negative | 3844487 - 3845731 | 44379.3 |
| atp-dependent rna helicase dead | BEN53_RS19550 | Not Available | Negative | 3845885 - 3847774 | 70550.5 |
| protein yrbn | BEN53_RS19555 | Not Available | Negative | 3847767 - 3847847 | 2979.59 |
| lipoprotein nlpi | BEN53_RS19560 | Not Available | Negative | 3847954 - 3848838 | 33622.5 |
| polyribonucleotide nucleotidyltransferase | BEN53_RS19565 | Not Available | Negative | 3848947 - 3851082 | 77119.6 |
| 30s ribosomal protein s15 | BEN53_RS19570 | Not Available | Negative | 3851329 - 3851598 | 10269.4 |
| trna pseudouridine(55) synthase trub | BEN53_RS19575 | Not Available | Negative | 3851747 - 3852691 | 35089.2 |
| 30s ribosome-binding factor rbfa | BEN53_RS19580 | Not Available | Negative | 3852691 - 3853092 | 15155.4 |
| translation initiation factor if-2 | BEN53_RS19585 | Not Available | Negative | 3853256 - 3855928 | 97355.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




