Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| division/outer membrane stress-associated lipid-binding lipoprotein | BEN53_RS19490 | Not Available | Positive | 3836323 - 3836898 | 20059.1 |
| permease | BEN53_RS19495 | Not Available | Negative | 3837011 - 3838051 | 37195.8 |
| nad(p)h-binding protein | BEN53_RS19500 | Not Available | Negative | 3838124 - 3838759 | 23225.4 |
| protein/nucleic acid deglycase | BEN53_RS19505 | Not Available | Positive | 3838887 - 3839405 | 18845.4 |
| yhbp family protein | BEN53_RS19510 | Not Available | Negative | 3839385 - 3839828 | 16863.3 |
| dna damage response exodeoxyribonuclease yhbq | BEN53_RS19515 | Not Available | Positive | 3839879 - 3840181 | 11301.7 |
| gnat family n-acetyltransferase | BEN53_RS19520 | Not Available | Negative | 3840168 - 3840671 | 18534.8 |
| ubiquinone anaerobic biosynthesis accessory factor ubit | BEN53_RS19525 | Not Available | Negative | 3840665 - 3841189 | 19640.9 |
| ubiquinone anaerobic biosynthesis protein ubiu | BEN53_RS19530 | Not Available | Positive | 3841398 - 3842393 | 37049.2 |
| u32 family peptidase | BEN53_RS19535 | Not Available | Positive | 3842402 - 3843280 | 32537.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




