Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional threonine ammonia-lyase/l-serine ammonia-lyase tdcb | BEN53_RS19330 | Not Available | Negative | 3808428 - 3809417 | 35234.5 |
| transcriptional regulator tdca | BEN53_RS19340 | Not Available | Negative | 3809516 - 3810454 | 34540.9 |
| transcriptional activator tdcr | BEN53_RS27480 | Not Available | Positive | 3810769 - 3810987 | 8587.2 |
| protein yhab | BEN53_RS19350 | Not Available | Positive | 3811243 - 3811782 | 20602.7 |
| yhac family protein | BEN53_RS19355 | Not Available | Positive | 3811804 - 3812991 | 45196.3 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 3813211 - 3813587 | Not Available |
| glycerate 2-kinase | BEN53_RS19365 | Not Available | Negative | 3813620 - 3814765 | 39198.7 |
| 2-hydroxy-3-oxopropionate reductase | BEN53_RS19370 | Not Available | Negative | 3814862 - 3815752 | 30691.7 |
| 2-dehydro-3-deoxyglucarate aldolase | BEN53_RS19375 | Not Available | Negative | 3815782 - 3816552 | 27400.6 |
| galactarate/glucarate/glycerate transporter garp | BEN53_RS19380 | Not Available | Negative | 3816568 - 3817902 | 48982.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




