Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator yhaj | BEN53_RS19275 | Not Available | Negative | 3796707 - 3797603 | 33231.3 |
| pirin family protein | BEN53_RS19280 | Not Available | Positive | 3797708 - 3798409 | 25963.1 |
| protein yhal | BEN53_RS19285 | Not Available | Positive | 3798432 - 3798596 | 5921.0 |
| cysteine desulfidase | BEN53_RS19290 | Not Available | Negative | 3798730 - 3800040 | 45290.7 |
| amino acid permease | BEN53_RS19295 | Not Available | Negative | 3800068 - 3801399 | 48317.6 |
| l-serine ammonia-lyase | BEN53_RS19305 | Not Available | Negative | 3801674 - 3803038 | 48481.5 |
| enamine/imine deaminase | BEN53_RS19310 | Not Available | Negative | 3803110 - 3803499 | 14008.0 |
| 2-ketobutyrate formate-lyase/pyruvate formate-lyase | BEN53_RS19315 | Not Available | Negative | 3803513 - 3805807 | 85959.4 |
| propionate kinase | BEN53_RS19320 | Not Available | Negative | 3805841 - 3807049 | 43353.6 |
| threonine/serine transporter tdcc | BEN53_RS19325 | Not Available | Negative | 3807075 - 3808406 | 48895.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




