Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbp-type peptidyl-prolyl cis-trans isomerase | BEN53_RS01145 | Not Available | Positive | 218584 - 219204 | 22217.5 |
| d-serine/d-alanine/glycine transporter | BEN53_RS01150 | Not Available | Positive | 219513 - 220925 | 51662.6 |
| iron-sulfur cluster repair protein ytfe | BEN53_RS01155 | Not Available | Negative | 220970 - 221632 | 24898.1 |
| dmt family transporter | BEN53_RS01160 | Not Available | Negative | 221740 - 222705 | 35196.6 |
| nad(p)h:quinone oxidoreductase | BEN53_RS01165 | Not Available | Negative | 222813 - 223673 | 29789.3 |
| winged helix-turn-helix transcriptional regulator | BEN53_RS01170 | Not Available | Positive | 223762 - 224142 | 14093.1 |
| 2',3'-cyclic-nucleotide 2'-phosphodiesterase | BEN53_RS01175 | Not Available | Negative | 224270 - 226213 | 70835.9 |
| 3'(2'),5'-bisphosphate nucleotidase cysq | BEN53_RS01180 | Not Available | Positive | 226403 - 227143 | 27191.4 |
| ytfj family protein | BEN53_RS01185 | Not Available | Negative | 227133 - 227690 | 20617.9 |
| duf1107 domain-containing protein | BEN53_RS01190 | Not Available | Positive | 228015 - 228221 | 8072.24 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




