Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ygjv family protein | BEN53_RS19175 | Not Available | Negative | 3779079 - 3779630 | 20594.8 |
| altronate dehydratase | BEN53_RS19180 | Not Available | Negative | 3779713 - 3781200 | 54068.2 |
| glucuronate isomerase | BEN53_RS19185 | Not Available | Negative | 3781215 - 3782627 | 54002.2 |
| hexuronate transporter exut | BEN53_RS19190 | Not Available | Positive | 3783110 - 3784408 | 46909.0 |
| cfae/cbld family pilus tip adhesin | BEN53_RS19195 | Not Available | Negative | 3784484 - 3785563 | 40082.6 |
| tcfc e-set like domain-containing protein | BEN53_RS19200 | Not Available | Negative | 3785560 - 3788244 | 98439.8 |
| cs1 type fimbrial major subunit | BEN53_RS19205 | Not Available | Negative | 3788335 - 3788835 | 17668.5 |
| fimbria/pilus periplasmic chaperone | BEN53_RS19210 | Not Available | Negative | 3788865 - 3789581 | 26508.0 |
| transcriptional regulator exur | BEN53_RS19215 | Not Available | Positive | 3789873 - 3790649 | 29837.3 |
| hypothetical protein | BEN53_RS27475 | Not Available | Positive | 3790889 - 3790972 | 3330.04 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




