Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | BEN53_RS19125 | Not Available | Positive | 3765389 - 3766822 | 52175.7 |
| protein ygjj | BEN53_RS19130 | Not Available | Positive | 3766956 - 3768026 | 40110.5 |
| alpha-glucosidase | BEN53_RS19135 | Not Available | Positive | 3768043 - 3770394 | 88283.6 |
| nadph-dependent 2,4-dienoyl-coa reductase | BEN53_RS19140 | Not Available | Positive | 3770565 - 3772583 | 72532.5 |
| 23s rrna (guanine(1835)-n(2))-methyltransferase rlmg | BEN53_RS19145 | Not Available | Negative | 3772701 - 3773837 | 42312.8 |
| m48 family metallopeptidase | BEN53_RS19150 | Not Available | Positive | 3773922 - 3774425 | 19443.6 |
| vancomycin high temperature exclusion protein | BEN53_RS19155 | Not Available | Positive | 3774502 - 3775194 | 25622.4 |
| gfo/idh/moca family protein | BEN53_RS19160 | Not Available | Positive | 3775273 - 3776259 | 36287.3 |
| terc family membrane protein alx | BEN53_RS19165 | Not Available | Positive | 3776542 - 3777507 | 35983.2 |
| serine/threonine transporter sstt | BEN53_RS19170 | Not Available | Positive | 3777831 - 3779075 | 43494.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




