Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | BEN53_RS19000 | Not Available | Negative | 3743423 - 3743791 | 13562.2 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | BEN53_RS19005 | Not Available | Positive | 3743896 - 3744513 | 22194.7 |
| l-tartrate utilization transcriptional activator ttdr | BEN53_RS19010 | Not Available | Negative | 3744526 - 3745458 | 35344.7 |
| l(+)-tartrate dehydratase subunit alpha | BEN53_RS19020 | Not Available | Positive | 3745665 - 3746576 | 32735.5 |
| l(+)-tartrate dehydratase subunit beta | BEN53_RS19025 | Not Available | Positive | 3746573 - 3747178 | 22680.8 |
| l-tartrate/succinate antiporter | BEN53_RS19030 | Not Available | Positive | 3747227 - 3748690 | 52906.5 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsad | BEN53_RS19035 | Not Available | Negative | 3748733 - 3749746 | 35952.5 |
| 30s ribosomal protein s21 | BEN53_RS19045 | Not Available | Positive | 3749984 - 3750199 | 8500.42 |
| dna primase | BEN53_RS19050 | Not Available | Positive | 3750310 - 3752055 | 65568.5 |
| rna polymerase sigma factor rpod | BEN53_RS19060 | Not Available | Positive | 3752250 - 3754091 | 70211.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




