Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell surface composition regulator glgs | BEN53_RS18940 | Not Available | Negative | 3731404 - 3731604 | 7892.31 |
| ob-fold-containig protein | BEN53_RS18945 | Not Available | Positive | 3731873 - 3732502 | 23088.5 |
| flotillin family protein | BEN53_RS18950 | Not Available | Positive | 3732529 - 3734190 | 60747.3 |
| type i toxin-antitoxin system ibs family toxin | BEN53_RS18960 | Not Available | Positive | 3734430 - 3734489 | 2241.07 |
| bifunctional d-glycero-beta-d-manno-heptose-7-phosphate kinase/d-glycero-beta-d-manno-heptose 1-phosphate adenylyltransferase hlde | BEN53_RS18965 | Not Available | Negative | 3734609 - 3736042 | 51053.6 |
| bifunctional | BEN53_RS18970 | Not Available | Negative | 3736090 - 3738930 | 108616.0 |
| inorganic triphosphatase | BEN53_RS18975 | Not Available | Negative | 3738953 - 3740266 | 48929.3 |
| tigr04211 family sh3 domain-containing protein | BEN53_RS18985 | Not Available | Positive | 3740508 - 3741128 | 23077.7 |
| fused trna nucleotidyltransferase/2',3'-cyclic phosphodiesterase/2' nucleotidase/phosphatase cca | BEN53_RS18990 | Not Available | Positive | 3741192 - 3742430 | 46483.8 |
| undecaprenyl-diphosphate phosphatase | BEN53_RS18995 | Not Available | Negative | 3742511 - 3743332 | 29774.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




