Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hyad/hybd family hydrogenase maturation endopeptidase | BEN53_RS18660 | Not Available | Negative | 3681793 - 3682287 | 17751.8 |
| hydrogenase 2 large subunit | BEN53_RS18665 | Not Available | Negative | 3682287 - 3683990 | 62494.6 |
| ni/fe-hydrogenase cytochrome b subunit | BEN53_RS18670 | Not Available | Negative | 3683987 - 3685165 | 43604.6 |
| hydrogenase 2 operon protein hyba | BEN53_RS18675 | Not Available | Negative | 3685155 - 3686141 | 36005.0 |
| hydrogenase 2 small subunit | BEN53_RS18680 | Not Available | Negative | 3686144 - 3687262 | 39654.3 |
| duf2623 family protein yghw | BEN53_RS18690 | Not Available | Negative | 3687451 - 3687738 | 10946.1 |
| hypothetical protein | BEN53_RS18695 | Not Available | Negative | 3687857 - 3688741 | 31622.2 |
| l-glyceraldehyde 3-phosphate reductase | BEN53_RS18705 | Not Available | Positive | 3688898 - 3689938 | 38834.4 |
| tigr00645 family protein | BEN53_RS18710 | Not Available | Negative | 3689978 - 3690472 | 18642.3 |
| nadp(+)-dependent aldehyde reductase | BEN53_RS18715 | Not Available | Positive | 3690663 - 3691547 | 31489.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




