Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | BEN53_RS18615 | Not Available | Negative | 3673455 - 3674213 | 28153.2 |
| dtmp kinase | BEN53_RS18620 | Not Available | Negative | 3674245 - 3674958 | 26363.2 |
| dtmp kinase | BEN53_RS18625 | Not Available | Positive | 3675132 - 3675824 | 25357.1 |
| inorganic phosphate transporter pitb | BEN53_RS18630 | Not Available | Negative | 3675873 - 3677372 | 53812.1 |
| bifunctional glutathionylspermidine amidase/synthase | BEN53_RS18635 | Not Available | Negative | 3677664 - 3679523 | 70535.8 |
| glutathione-dependent disulfide-bond oxidoreductase | BEN53_RS18640 | Not Available | Positive | 3679728 - 3680594 | 32393.4 |
| hypothetical protein | BEN53_RS27850 | Not Available | Negative | 3680623 - 3680704 | 3160.99 |
| hydrogenase maturation factor hybg | BEN53_RS18645 | Not Available | Negative | 3680717 - 3680965 | 8808.67 |
| hydrogenase maturation nickel metallochaperone hypa | BEN53_RS18650 | Not Available | Negative | 3680978 - 3681319 | 12698.1 |
| hydrogenase-2 assembly chaperone | BEN53_RS18655 | Not Available | Negative | 3681312 - 3681800 | 17964.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




