Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yggl family protein | BEN53_RS18135 | Not Available | Negative | 3579098 - 3579424 | 12841.2 |
| trna (guanosine(46)-n7)-methyltransferase trmb | BEN53_RS18140 | Not Available | Negative | 3579424 - 3580143 | 27308.9 |
| a/g-specific adenine glycosylase | BEN53_RS18150 | Not Available | Positive | 3580304 - 3581356 | 39137.2 |
| oxidative damage protection protein | BEN53_RS18155 | Not Available | Positive | 3581384 - 3581659 | 10953.2 |
| membrane-bound lytic murein transglycosylase mltc | BEN53_RS18160 | Not Available | Positive | 3581723 - 3582802 | 40114.8 |
| nucleoside permease nupg | BEN53_RS18165 | Not Available | Positive | 3583004 - 3584260 | 46392.0 |
| ornithine decarboxylase | BEN53_RS18170 | Not Available | Negative | 3584309 - 3586444 | 79376.6 |
| duf554 domain-containing protein | BEN53_RS18180 | Not Available | Positive | 3586837 - 3587544 | 24663.6 |
| Trna-phe | Not Available | Not Available | Positive | 3587650 - 3587725 | Not Available |
| tyrosine-type recombinase/integrase | BEN53_RS18190 | Not Available | Positive | 3587923 - 3589188 | 48047.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




