Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilt/pilu family type 4a pilus atpase | BEN53_RS18090 | Not Available | Negative | 3571481 - 3572461 | 35977.3 |
| pyridoxal phosphate homeostasis protein | BEN53_RS18095 | Not Available | Positive | 3572479 - 3573183 | 25818.9 |
| osmotic shock tolerance protein yggt | BEN53_RS18100 | Not Available | Positive | 3573201 - 3573767 | 21168.5 |
| duf167 family protein yggu | BEN53_RS18105 | Not Available | Positive | 3573764 - 3574054 | 10429.8 |
| xtp/ditp diphosphatase | BEN53_RS18110 | Not Available | Positive | 3574062 - 3574655 | 20969.9 |
| radical sam family heme chaperone hemw | BEN53_RS18115 | Not Available | Positive | 3574648 - 3575784 | 42570.6 |
| duf1202 family protein | BEN53_RS18120 | Not Available | Negative | 3575909 - 3576856 | 36049.5 |
| l-asparaginase 2 | BEN53_RS18125 | Not Available | Negative | 3576973 - 3578019 | 36852.7 |
| duf2884 domain-containing protein | BEN53_RS18130 | Not Available | Negative | 3578195 - 3578914 | 26430.8 |
| hypothetical protein | BEN53_RS27200 | Not Available | Negative | 3578935 - 3579075 | 5395.57 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




