Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarase e | BEN53_RS17990 | Not Available | Negative | 3552077 - 3552586 | 19272.9 |
| class ii fructose-bisphosphatase | BEN53_RS17995 | Not Available | Negative | 3552608 - 3553573 | 34325.5 |
| zinc-binding dehydrogenase | BEN53_RS18000 | Not Available | Negative | 3553570 - 3554847 | 45820.2 |
| pts mannitol transporter subunit iicb | BEN53_RS18005 | Not Available | Negative | 3554862 - 3556250 | 49032.1 |
| hypothetical protein | BEN53_RS18010 | Not Available | Negative | 3556305 - 3556720 | 15936.2 |
| transketolase | BEN53_RS18015 | Not Available | Negative | 3557034 - 3559025 | 72215.7 |
| metalloprotease loip | BEN53_RS18020 | Not Available | Positive | 3559303 - 3560061 | 26813.9 |
| agmatinase | BEN53_RS18025 | Not Available | Negative | 3560267 - 3561187 | 33558.9 |
| biosynthetic arginine decarboxylase | BEN53_RS18030 | Not Available | Negative | 3561325 - 3563301 | 73902.7 |
| acid stress response protein yqgb | BEN53_RS18035 | Not Available | Negative | 3563310 - 3563441 | 4859.08 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




