Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa c-acetyltransferase | BEN53_RS17630 | Not Available | Negative | 3474599 - 3475780 | 40977.1 |
| amino acid permease | BEN53_RS17635 | Not Available | Positive | 3476035 - 3477264 | 45101.9 |
| Trna-gly | Not Available | Not Available | Positive | 3477581 - 3477654 | Not Available |
| amidase activator acts | BEN53_RS17645 | Not Available | Negative | 3477733 - 3478485 | 26452.9 |
| xanthine dehydrogenase molybdenum-binding subunit xdha | BEN53_RS17655 | Not Available | Positive | 3478901 - 3481198 | 82721.1 |
| xanthine dehydrogenase fad-binding subunit xdhb | BEN53_RS17660 | Not Available | Positive | 3481209 - 3482087 | 31530.5 |
| xanthine dehydrogenase iron sulfur-binding subunit xdhc | BEN53_RS17665 | Not Available | Positive | 3482084 - 3482563 | 16922.7 |
| sigma-54 interaction domain-containing protein | BEN53_RS17670 | Not Available | Negative | 3482603 - 3484381 | 66028.9 |
| knotted carbamoyltransferase ygew | BEN53_RS17675 | Not Available | Positive | 3484860 - 3486047 | 44058.7 |
| diaminopropionate ammonia-lyase | BEN53_RS17680 | Not Available | Positive | 3486105 - 3487301 | 43330.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




