Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp(h)-dependent aldo-keto reductase | BEN53_RS17580 | Not Available | Positive | 3461784 - 3462824 | 38501.7 |
| lysophospholipid transporter lplt | BEN53_RS17585 | Not Available | Negative | 3462856 - 3464049 | 41626.1 |
| bifunctional acyl-acp--phospholipid o-acyltransferase/long-chain-fatty-acid--acp ligase | BEN53_RS17590 | Not Available | Negative | 3464042 - 3466201 | 80744.8 |
| hth-type transcriptional regulator galr | BEN53_RS17595 | Not Available | Positive | 3466787 - 3467818 | 37121.3 |
| diaminopimelate decarboxylase | BEN53_RS17600 | Not Available | Negative | 3467825 - 3469087 | 46159.0 |
| dna-binding transcriptional regulator lysr | BEN53_RS17605 | Not Available | Positive | 3469209 - 3470144 | 34424.7 |
| amino acid racemase | BEN53_RS17610 | Not Available | Negative | 3470131 - 3470823 | 25295.5 |
| arabinose-proton symporter arae | BEN53_RS17615 | Not Available | Negative | 3470952 - 3472370 | 51687.6 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | BEN53_RS17620 | Not Available | Negative | 3472685 - 3473446 | 27056.7 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | BEN53_RS17625 | Not Available | Negative | 3473476 - 3474312 | 31078.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




