Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cysteine desulfurase csda | BEN53_RS17425 | Not Available | Positive | 3428194 - 3429399 | 43308.7 |
| cysteine desulfurase sulfur acceptor subunit csde | BEN53_RS17430 | Not Available | Positive | 3429399 - 3429842 | 15943.2 |
| trna cyclic n6-threonylcarbamoyladenosine(37) synthase tcda | BEN53_RS17435 | Not Available | Negative | 3429893 - 3430699 | 28608.7 |
| murein transglycosylase a | BEN53_RS17440 | Not Available | Negative | 3430776 - 3431873 | 40412.9 |
| Trna-met | Not Available | Not Available | Positive | 3432082 - 3432158 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3432192 - 3432268 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 3432302 - 3432378 | Not Available |
| phosphoglycerate dehydrogenase | BEN53_RS17465 | Not Available | Negative | 3432457 - 3433404 | 34386.7 |
| kpsf/gutq family sugar-phosphate isomerase | BEN53_RS17470 | Not Available | Negative | 3433476 - 3434072 | 20915.4 |
| maly/patb family protein | BEN53_RS17475 | Not Available | Negative | 3434075 - 3435250 | 44903.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




