Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate adenylyltransferase subunit cysn | BEN53_RS16845 | Not Available | Negative | 3322172 - 3323599 | 52588.6 |
| sulfate adenylyltransferase subunit cysd | BEN53_RS16850 | Not Available | Negative | 3323601 - 3324509 | 35205.3 |
| alkaline phosphatase isozyme conversion aminopeptidase | BEN53_RS16855 | Not Available | Positive | 3324761 - 3325798 | 37887.3 |
| hok/gef family protein | BEN53_RS16860 | Not Available | Negative | 3325924 - 3326076 | 5559.11 |
| phosphoadenosine phosphosulfate reductase | BEN53_RS16870 | Not Available | Negative | 3326341 - 3327075 | 27976.4 |
| assimilatory sulfite reductase (nadph) hemoprotein subunit | BEN53_RS16875 | Not Available | Negative | 3327149 - 3328861 | 63963.8 |
| nadph-dependent assimilatory sulfite reductase flavoprotein subunit | BEN53_RS16880 | Not Available | Negative | 3328861 - 3330660 | 66255.3 |
| 6-carboxytetrahydropterin synthase qued | BEN53_RS16885 | Not Available | Positive | 3330979 - 3331341 | 13642.4 |
| fad-dependent oxidoreductase | BEN53_RS16890 | Not Available | Positive | 3331419 - 3332690 | 46236.7 |
| ferredoxin family protein | BEN53_RS16895 | Not Available | Positive | 3332681 - 3332941 | 9646.53 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




