Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpos | BEN53_RS16795 | Not Available | Negative | 3314739 - 3315731 | 37975.1 |
| murein hydrolase activator nlpd | BEN53_RS16800 | Not Available | Negative | 3315794 - 3316888 | 38595.3 |
| protein-l-isoaspartate o-methyltransferase | BEN53_RS16805 | Not Available | Negative | 3317073 - 3317699 | 23259.2 |
| 5'/3'-nucleotidase sure | BEN53_RS16810 | Not Available | Negative | 3317693 - 3318454 | 26902.0 |
| trna pseudouridine(13) synthase trud | BEN53_RS16815 | Not Available | Negative | 3318435 - 3319484 | 39045.6 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | BEN53_RS16820 | Not Available | Negative | 3319481 - 3319960 | 16868.5 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | BEN53_RS16825 | Not Available | Negative | 3319960 - 3320670 | 25711.7 |
| cell division protein ftsb | BEN53_RS16830 | Not Available | Negative | 3320689 - 3321000 | 11622.7 |
| duf3561 family protein | BEN53_RS16835 | Not Available | Negative | 3321194 - 3321517 | 12050.0 |
| adenylyl-sulfate kinase | BEN53_RS16840 | Not Available | Negative | 3321567 - 3322172 | 22322.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




