Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase transcriptional activator flha | BEN53_RS16750 | Not Available | Positive | 3305211 - 3307289 | 78400.5 |
| tobe domain-containing protein | BEN53_RS16755 | Not Available | Positive | 3307334 - 3307762 | 14508.6 |
| nitrous oxide-stimulated promoter family protein | BEN53_RS16760 | Not Available | Negative | 3307801 - 3308145 | 13535.7 |
| hypothetical protein | BEN53_RS27190 | Not Available | Negative | 3308222 - 3308356 | 4934.38 |
| dna mismatch repair protein muts | BEN53_RS16765 | Not Available | Positive | 3308432 - 3310993 | 95323.6 |
| protein-serine/threonine phosphatase | BEN53_RS16770 | Not Available | Positive | 3311099 - 3311755 | 25130.7 |
| non-oxidative hydroxyarylic acid decarboxylases subunit d | BEN53_RS16775 | Not Available | Negative | 3311797 - 3312033 | 9127.0 |
| non-oxidative hydroxyarylic acid decarboxylases subunit c | BEN53_RS16780 | Not Available | Negative | 3312044 - 3313471 | 52355.7 |
| non-oxidative hydroxyarylic acid decarboxylases subunit b | BEN53_RS16785 | Not Available | Negative | 3313471 - 3314064 | 21516.3 |
| marr family winged helix-turn-helix transcriptional regulator | BEN53_RS16790 | Not Available | Positive | 3314211 - 3314618 | 15513.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




