Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formate hydrogenlyase subunit hyce | BEN53_RS16700 | Not Available | Negative | 3295635 - 3297344 | 64984.1 |
| formate hydrogenlyase subunit hycd | BEN53_RS16705 | Not Available | Negative | 3297362 - 3298285 | 33059.4 |
| formate hydrogenlyase subunit 3 | BEN53_RS16710 | Not Available | Negative | 3298288 - 3300114 | 64159.2 |
| formate hydrogenlyase subunit hycb | BEN53_RS16715 | Not Available | Negative | 3300111 - 3300722 | 21876.4 |
| formate hydrogenlyase regulator hyca | BEN53_RS16720 | Not Available | Negative | 3300847 - 3301308 | 17627.9 |
| hydrogenase maturation nickel metallochaperone hypa | BEN53_RS16725 | Not Available | Positive | 3301520 - 3301870 | 13168.9 |
| hydrogenase nickel incorporation protein hypb | BEN53_RS16730 | Not Available | Positive | 3301874 - 3302746 | 31596.9 |
| hydrogenase 3 maturation protein hypc | BEN53_RS16735 | Not Available | Positive | 3302737 - 3303009 | 9718.55 |
| hydrogenase formation protein hypd | BEN53_RS16740 | Not Available | Positive | 3303009 - 3304130 | 41313.6 |
| hydrogenase maturation carbamoyl dehydratase hype | BEN53_RS16745 | Not Available | Positive | 3304127 - 3305137 | 35080.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




