Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbamoyltransferase hypf | BEN53_RS16650 | Not Available | Negative | 3285336 - 3287576 | 81396.1 |
| electron transport protein hydn | BEN53_RS16655 | Not Available | Negative | 3287729 - 3288256 | 19027.2 |
| dna-binding transcriptional regulator ascg | BEN53_RS16660 | Not Available | Negative | 3288405 - 3289415 | 36717.2 |
| pts cellobiose/arbutin/salicin transporter subunit iibc | BEN53_RS16665 | Not Available | Positive | 3289674 - 3291131 | 51063.1 |
| 6-phospho-beta-glucosidase ascb | BEN53_RS16670 | Not Available | Positive | 3291140 - 3292564 | 53877.8 |
| hypothetical protein | BEN53_RS16675 | Not Available | Negative | 3292651 - 3293406 | 28365.9 |
| hydrogenase maturation peptidase hyci | BEN53_RS16680 | Not Available | Negative | 3293449 - 3293916 | 16928.4 |
| formate hydrogenlyase assembly protein hych | BEN53_RS16685 | Not Available | Negative | 3293909 - 3294319 | 15521.6 |
| formate hydrogenlyase subunit hycg | BEN53_RS16690 | Not Available | Negative | 3294316 - 3295083 | 27999.7 |
| formate hydrogenlyase subunit hycf | BEN53_RS16695 | Not Available | Negative | 3295083 - 3295625 | 20329.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




