Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-arg | Not Available | Not Available | Positive | 3268401 - 3268477 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3268542 - 3268618 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 3268683 - 3268759 | Not Available |
| Trna-ser | Not Available | Not Available | Positive | 3268763 - 3268855 | Not Available |
| carbon storage regulator csra | BEN53_RS16570 | Not Available | Negative | 3269171 - 3269356 | 6856.34 |
| alanine--trna ligase | BEN53_RS16575 | Not Available | Negative | 3269591 - 3272221 | 96007.8 |
| recombination regulator recx | BEN53_RS16580 | Not Available | Negative | 3272350 - 3272850 | 19411.1 |
| recombinase reca | BEN53_RS16585 | Not Available | Negative | 3272919 - 3273980 | 37975.6 |
| nicotinamide-nucleotide amidase | BEN53_RS16590 | Not Available | Negative | 3274060 - 3274557 | 17582.7 |
| lytic murein transglycosylase b | BEN53_RS16595 | Not Available | Negative | 3274702 - 3275787 | 40272.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




