Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | BEN53_RS16440 | Not Available | Positive | 3250435 - 3250866 | 16132.4 |
| glutaredoxin-like protein nrdh | BEN53_RS16450 | Not Available | Positive | 3251075 - 3251320 | 9170.01 |
| class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdi | BEN53_RS16455 | Not Available | Positive | 3251317 - 3251727 | 15341.3 |
| class 1b ribonucleoside-diphosphate reductase subunit alpha | BEN53_RS16460 | Not Available | Positive | 3251700 - 3253844 | 80453.4 |
| class 1b ribonucleoside-diphosphate reductase subunit beta | BEN53_RS16465 | Not Available | Positive | 3253854 - 3254813 | 36474.1 |
| glycine betaine/l-proline abc transporter atp-binding protein prov | BEN53_RS16475 | Not Available | Positive | 3255169 - 3256371 | 44116.4 |
| glycine betaine/l-proline abc transporter permease prow | BEN53_RS16480 | Not Available | Positive | 3256364 - 3257428 | 37562.0 |
| glycine betaine/l-proline abc transporter substrate-binding protein prox | BEN53_RS16485 | Not Available | Positive | 3257486 - 3258478 | 35952.3 |
| mfs transporter | BEN53_RS16490 | Not Available | Positive | 3258670 - 3259854 | 41618.9 |
| l-valine exporter subunit ygaz | BEN53_RS16495 | Not Available | Positive | 3259978 - 3260715 | 26109.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




