Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent chaperone clpb | BEN53_RS16175 | Not Available | Negative | 3200706 - 3203279 | 95590.8 |
| purine nucleoside phosphorylase yfih | BEN53_RS16180 | Not Available | Negative | 3203409 - 3204140 | 26354.4 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | BEN53_RS16185 | Not Available | Negative | 3204137 - 3205117 | 37095.8 |
| outer membrane protein assembly factor bamd | BEN53_RS16190 | Not Available | Positive | 3205252 - 3205989 | 27830.9 |
| is4-like element is4 family transposase | BEN53_RS16195 | Not Available | Positive | 3206093 - 3207439 | 51170.8 |
| ribosome-associated translation inhibitor raia | BEN53_RS16205 | Not Available | Positive | 3207700 - 3208041 | 12785.3 |
| phea operon leader peptide phel | BEN53_RS16210 | Not Available | Positive | 3208145 - 3208192 | 1912.35 |
| bifunctional chorismate mutase/prephenate dehydratase | BEN53_RS16215 | Not Available | Positive | 3208291 - 3209451 | 43086.8 |
| bifunctional chorismate mutase/prephenate dehydrogenase | BEN53_RS16220 | Not Available | Negative | 3209494 - 3210615 | 42016.9 |
| 3-deoxy-7-phosphoheptulonate synthase arof | BEN53_RS16225 | Not Available | Negative | 3210626 - 3211696 | 38820.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




