Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpoe | BEN53_RS16075 | Not Available | Negative | 3178795 - 3179370 | 21697.0 |
| rpoe leader peptide rsed | BEN53_RS27175 | Not Available | Negative | 3179367 - 3179522 | 6229.83 |
| l-aspartate oxidase | BEN53_RS16080 | Not Available | Positive | 3179778 - 3181400 | 60225.8 |
| trna(1)(val) (adenine(37)-n(6))-methyltransferase trmn | BEN53_RS16085 | Not Available | Negative | 3181385 - 3182122 | 27305.4 |
| atp-dependent rna helicase srmb | BEN53_RS16090 | Not Available | Positive | 3182254 - 3183588 | 49887.0 |
| lysr family transcriptional regulator | BEN53_RS16095 | Not Available | Negative | 3183621 - 3184502 | 33226.2 |
| cysteine/o-acetylserine transporter | BEN53_RS16100 | Not Available | Positive | 3184605 - 3185192 | 21335.7 |
| autonomous glycyl radical cofactor grca | BEN53_RS16105 | Not Available | Negative | 3185247 - 3185630 | 14269.0 |
| uracil-dna glycosylase | BEN53_RS16110 | Not Available | Positive | 3185935 - 3186624 | 25682.6 |
| trna/rrna methyltransferase | BEN53_RS16115 | Not Available | Negative | 3186672 - 3187709 | 37786.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




