Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | BEN53_RS15865 | Not Available | Positive | 3133865 - 3134719 | 31542.7 |
| stationary phase inducible protein csie | BEN53_RS15870 | Not Available | Positive | 3134910 - 3136190 | 49064.4 |
| 3-phenylpropionate mfs transporter | BEN53_RS15875 | Not Available | Negative | 3136182 - 3137321 | 41597.1 |
| dna-binding transcriptional regulator hcar | BEN53_RS15880 | Not Available | Negative | 3137481 - 3138371 | 32813.2 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit alpha | BEN53_RS15885 | Not Available | Positive | 3138507 - 3139868 | 51096.8 |
| 3-phenylpropionate/cinnamic acid dioxygenase subunit beta | BEN53_RS15890 | Not Available | Positive | 3139865 - 3140383 | 20536.3 |
| bifunctional 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit | BEN53_RS15895 | Not Available | Positive | 3140383 - 3140703 | 11329.3 |
| 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | BEN53_RS15900 | Not Available | Positive | 3140700 - 3141512 | 28471.3 |
| phenylpropionate dioxygenase ferredoxin reductase subunit | BEN53_RS15905 | Not Available | Positive | 3141522 - 3142724 | 43876.3 |
| doxx family protein | BEN53_RS15910 | Not Available | Positive | 3142821 - 3143243 | 15198.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




