Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | BEN53_RS15760 | Not Available | Negative | 3110770 - 3111888 | 40686.1 |
| cytoskeleton protein rodz | BEN53_RS15765 | Not Available | Negative | 3111915 - 3112925 | 36253.7 |
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | BEN53_RS15775 | Not Available | Negative | 3113210 - 3114364 | 43088.0 |
| nucleoside-diphosphate kinase | BEN53_RS15780 | Not Available | Negative | 3114514 - 3114945 | 15437.3 |
| peptidoglycan glycosyltransferase pbpc | BEN53_RS15785 | Not Available | Negative | 3115094 - 3117406 | 85075.9 |
| alpha2-macroglobulin | BEN53_RS15790 | Not Available | Negative | 3117407 - 3122365 | 181327.0 |
| 3-mercaptopyruvate sulfurtransferase | BEN53_RS15795 | Not Available | Positive | 3122572 - 3123417 | 30887.5 |
| small toxic inner membrane protein timp | BEN53_RS27620 | Not Available | Positive | 3123757 - 3123882 | 4531.63 |
| enhanced serine sensitivity protein sseb | BEN53_RS15805 | Not Available | Negative | 3123914 - 3124690 | 28627.2 |
| aminopeptidase pepb | BEN53_RS15810 | Not Available | Negative | 3124850 - 3126133 | 46180.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




