Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase 4 catalytic subunit hyfi | BEN53_RS15605 | Not Available | Positive | 3069142 - 3069900 | 28074.9 |
| hydrogenase 4 assembly chaperone hyfj | BEN53_RS15610 | Not Available | Positive | 3069893 - 3070306 | 15579.7 |
| dna-binding transcriptional regulator hyfr | BEN53_RS15615 | Not Available | Positive | 3070336 - 3072348 | 75309.7 |
| formate transporter focb | BEN53_RS15620 | Not Available | Positive | 3072370 - 3073218 | 30581.3 |
| ai-2e family transporter | BEN53_RS15625 | Not Available | Negative | 3073255 - 3074316 | 39196.9 |
| beta-barrel assembly-enhancing protease | BEN53_RS15630 | Not Available | Positive | 3074529 - 3075992 | 53939.1 |
| arsenate reductase (glutaredoxin) | BEN53_RS15635 | Not Available | Positive | 3076013 - 3076372 | 13417.4 |
| dnaa inactivator hda | BEN53_RS15640 | Not Available | Negative | 3076478 - 3077179 | 26634.2 |
| uracil permease | BEN53_RS15645 | Not Available | Negative | 3077274 - 3078563 | 45095.1 |
| uracil phosphoribosyltransferase | BEN53_RS15650 | Not Available | Negative | 3078649 - 3079275 | 22534.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




