Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system transcriptional repressor | BEN53_RS15555 | Not Available | Positive | 3058294 - 3058866 | 20769.8 |
| thioredoxin-dependent thiol peroxidase | BEN53_RS15560 | Not Available | Positive | 3058866 - 3059336 | 17634.9 |
| hydrogenase 4 subunit hyfa | BEN53_RS15565 | Not Available | Positive | 3059589 - 3060206 | 22173.5 |
| hydrogenase 4 subunit b | BEN53_RS15570 | Not Available | Positive | 3060206 - 3062224 | 72681.5 |
| hydrogenase 4 subunit hyfc | BEN53_RS15575 | Not Available | Positive | 3062235 - 3063182 | 34328.3 |
| hydrogenase 4 subunit hyfd | BEN53_RS15580 | Not Available | Positive | 3063199 - 3064638 | 51797.7 |
| hydrogenase 4 membrane subunit | BEN53_RS15585 | Not Available | Positive | 3064650 - 3065300 | 23403.1 |
| hydrogenase 4 subunit f | BEN53_RS15590 | Not Available | Positive | 3065305 - 3066885 | 56617.4 |
| hydrogenase 4 catalytic subunit hyfg | BEN53_RS15595 | Not Available | Positive | 3066875 - 3068590 | 65072.1 |
| hydrogenase 4 subunit h | BEN53_RS15600 | Not Available | Positive | 3068600 - 3069145 | 20143.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




