Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ypfm | BEN53_RS15505 | Not Available | Negative | 3049224 - 3049283 | 2408.02 |
| arsc family reductase | BEN53_RS15510 | Not Available | Positive | 3049664 - 3050020 | 13559.3 |
| succinyl-diaminopimelate desuccinylase | BEN53_RS15515 | Not Available | Positive | 3050024 - 3051151 | 41271.4 |
| ypfn family protein | BEN53_RS15520 | Not Available | Positive | 3051179 - 3051379 | 8071.78 |
| esterase | BEN53_RS15525 | Not Available | Negative | 3051460 - 3052158 | 24801.4 |
| trna cytosine(34) acetyltransferase tmca | BEN53_RS15530 | Not Available | Negative | 3052232 - 3054247 | 74727.4 |
| neutral zinc metallopeptidase | BEN53_RS15535 | Not Available | Negative | 3054262 - 3055125 | 31462.0 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | BEN53_RS15540 | Not Available | Negative | 3055293 - 3056006 | 26996.5 |
| outer membrane protein assembly factor bamc | BEN53_RS15545 | Not Available | Negative | 3056219 - 3057253 | 36844.5 |
| 4-hydroxy-tetrahydrodipicolinate synthase | BEN53_RS15550 | Not Available | Negative | 3057270 - 3058148 | 31285.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




