Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ethanolamine utilization microcompartment protein euts | BEN53_RS15455 | Not Available | Negative | 3032807 - 3033142 | 11650.3 |
| nadp-dependent oxaloacetate-decarboxylating malate dehydrogenase | BEN53_RS15460 | Not Available | Negative | 3033435 - 3035714 | 82432.2 |
| transaldolase | BEN53_RS15465 | Not Available | Positive | 3036003 - 3036953 | 35680.7 |
| transketolase | BEN53_RS15470 | Not Available | Positive | 3036973 - 3038976 | 73062.8 |
| duf1176 domain-containing protein | BEN53_RS15475 | Not Available | Negative | 3039079 - 3040122 | 38768.6 |
| gdp-mannose pyrophosphatase nudk | BEN53_RS15480 | Not Available | Negative | 3040248 - 3040823 | 21706.9 |
| formate-dependent uric acid utilization protein aega | BEN53_RS15485 | Not Available | Negative | 3040891 - 3042870 | 71892.0 |
| nitrate/nitrite two-component system sensor histidine kinase narq | BEN53_RS15490 | Not Available | Positive | 3043076 - 3044776 | 63659.6 |
| multidrug efflux rnd transporter permease acrd | BEN53_RS15495 | Not Available | Positive | 3044940 - 3048053 | 113068.0 |
| is30-like element isapl1 family transposase | BEN53_RS15500 | Not Available | Positive | 3048143 - 3049117 | 37701.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




