Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminopeptidase | BEN53_RS15105 | Not Available | Negative | 2969773 - 2970810 | 37385.1 |
| aminopeptidase | BEN53_RS15110 | Not Available | Negative | 2970810 - 2971895 | 39764.5 |
| pts fructose transporter subunit iic | BEN53_RS15115 | Not Available | Negative | 2971910 - 2973157 | 43914.0 |
| pts fructose transporter subunit iib | BEN53_RS15120 | Not Available | Negative | 2973179 - 2973505 | 11736.0 |
| glucokinase | BEN53_RS15125 | Not Available | Negative | 2973724 - 2974689 | 34711.1 |
| ion channel protein | BEN53_RS15130 | Not Available | Positive | 2974893 - 2976149 | 43641.6 |
| duf2502 domain-containing protein ypec | BEN53_RS15135 | Not Available | Positive | 2976264 - 2976590 | 13263.4 |
| nramp family divalent metal transporter | BEN53_RS15140 | Not Available | Negative | 2976731 - 2977969 | 44196.5 |
| nucleoside permease nupc | BEN53_RS15145 | Not Available | Positive | 2978305 - 2979507 | 43478.4 |
| sensor domain-containing phosphodiesterase | BEN53_RS15150 | Not Available | Negative | 2979556 - 2981745 | 83540.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




