Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yfdx family protein | BEN53_RS15050 | Not Available | Negative | 2959032 - 2959664 | 22875.3 |
| colanic acid biosynthesis lipoprotein ypdi | BEN53_RS15055 | Not Available | Positive | 2959960 - 2960235 | 10153.5 |
| yfdy family protein | BEN53_RS15060 | Not Available | Negative | 2960312 - 2960554 | 8923.5 |
| kdo(2)-lipid iv(a) palmitoleoyltransferase | BEN53_RS15070 | Not Available | Positive | 2960907 - 2961827 | 35511.5 |
| membrane protein ypdk | BEN53_RS15075 | Not Available | Positive | 2962183 - 2962254 | 2704.57 |
| alanine transaminase | BEN53_RS15080 | Not Available | Negative | 2962319 - 2963557 | 46218.8 |
| two-component system sensor histidine kinase ypda | BEN53_RS15085 | Not Available | Positive | 2963934 - 2965631 | 62721.3 |
| two-component system response regulator ypdb | BEN53_RS15090 | Not Available | Positive | 2965646 - 2966380 | 28722.6 |
| arac family transcriptional regulator | BEN53_RS15095 | Not Available | Positive | 2966393 - 2967250 | 32398.5 |
| phosphoenolpyruvate--protein phosphotransferase | BEN53_RS15100 | Not Available | Negative | 2967253 - 2969748 | 92180.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




