Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BEN53_RS27615 | Not Available | Positive | 2926152 - 2926532 | 14180.6 |
| phospholipid-binding lipoprotein mlaa | BEN53_RS14950 | Not Available | Negative | 2927578 - 2928333 | 28009.2 |
| formate/nitrite transporter family protein | BEN53_RS14960 | Not Available | Positive | 2928627 - 2929559 | 34500.2 |
| Trna-arg | Not Available | Not Available | Positive | 2929635 - 2929709 | Not Available |
| hypothetical protein | BEN53_RS14970 | Not Available | Negative | 2930147 - 2930677 | 19699.9 |
| phase-variable autotransporter adhesin upae | BEN53_RS14975 | Not Available | Negative | 2930725 - 2938644 | 270121.0 |
| helix-turn-helix transcriptional regulator | BEN53_RS14980 | Not Available | Negative | 2938669 - 2939289 | 23950.2 |
| tyrosine-type dna invertase ipua | BEN53_RS14985 | Not Available | Negative | 2939607 - 2940236 | 24225.4 |
| tyrosine-type dna invertase ipub | BEN53_RS14990 | Not Available | Positive | 2940985 - 2941554 | 22073.1 |
| dna-binding transcriptional regulator dsdc | BEN53_RS14995 | Not Available | Negative | 2941949 - 2942896 | 35924.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




