Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | BEN53_RS14420 | Not Available | Negative | 2820362 - 2821651 | 46153.2 |
| l-rhamnonate dehydratase | BEN53_RS14425 | Not Available | Negative | 2821708 - 2822913 | 44211.9 |
| iclr family transcriptional regulator | BEN53_RS14430 | Not Available | Negative | 2822928 - 2823710 | 28919.9 |
| nicotinamide mononucleotide deamidase-related protein yfay | BEN53_RS14435 | Not Available | Negative | 2823930 - 2825132 | 44319.3 |
| yfaz family outer membrane protein | BEN53_RS14440 | Not Available | Negative | 2825232 - 2825774 | 18596.8 |
| nucleoside triphosphatase nudi | BEN53_RS14445 | Not Available | Positive | 2826052 - 2826477 | 16419.7 |
| lipopolysaccharide core heptose(ii)-phosphate phosphatase ais | BEN53_RS14450 | Not Available | Negative | 2826516 - 2827118 | 22291.8 |
| udp-4-amino-4-deoxy-l-arabinose aminotransferase | BEN53_RS14455 | Not Available | Positive | 2827426 - 2828565 | 41672.2 |
| undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase | BEN53_RS14460 | Not Available | Positive | 2828569 - 2829537 | 36311.4 |
| bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arna | BEN53_RS14465 | Not Available | Positive | 2829537 - 2831519 | 74179.0 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




