Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetate coa-transferase subunit alpha | BEN53_RS14270 | Not Available | Positive | 2779390 - 2780052 | 23536.8 |
| acetate coa-transferase subunit beta | BEN53_RS14275 | Not Available | Positive | 2780052 - 2780702 | 22975.1 |
| tigr00366 family protein | BEN53_RS14280 | Not Available | Positive | 2780699 - 2782021 | 47548.7 |
| acetyl-coa acetyltransferase | BEN53_RS14285 | Not Available | Positive | 2782052 - 2783236 | 40341.0 |
| yfap family protein | BEN53_RS14290 | Not Available | Negative | 2783310 - 2784086 | 28245.2 |
| yfaq family protein | BEN53_RS14295 | Not Available | Negative | 2784091 - 2785740 | 61400.0 |
| alpha-2-macroglobulin family protein | BEN53_RS14300 | Not Available | Negative | 2785741 - 2790255 | 166533.0 |
| duf1175 domain-containing protein | BEN53_RS14305 | Not Available | Negative | 2790279 - 2790902 | 23752.5 |
| duf2138 domain-containing protein | BEN53_RS14310 | Not Available | Negative | 2790899 - 2792587 | 62661.6 |
| dna topoisomerase (atp-hydrolyzing) subunit a | BEN53_RS14315 | Not Available | Negative | 2792736 - 2795363 | 97071.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




