Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| microcin j25 efflux abc transporter yoji | BEN53_RS14210 | Not Available | Negative | 2763039 - 2764682 | 61586.4 |
| dna oxidative demethylase alkb | BEN53_RS14215 | Not Available | Negative | 2764758 - 2765408 | 24019.8 |
| bifunctional dna-binding transcriptional regulator/o6-methylguanine-dna methyltransferase ada | BEN53_RS14220 | Not Available | Negative | 2765408 - 2766472 | 39293.9 |
| fad:protein fmn transferase apbe | BEN53_RS14225 | Not Available | Negative | 2766546 - 2767601 | 38578.0 |
| porin ompc | BEN53_RS14230 | Not Available | Negative | 2767713 - 2768807 | 40242.1 |
| phosphotransferase rcsd | BEN53_RS14245 | Not Available | Positive | 2769546 - 2772218 | 100313.0 |
| response regulator transcription factor rcsb | BEN53_RS14250 | Not Available | Positive | 2772235 - 2772885 | 23672.0 |
| two-component system sensor histidine kinase rcsc | BEN53_RS14255 | Not Available | Negative | 2772970 - 2775819 | 106534.0 |
| two-component system sensor histidine kinase atos | BEN53_RS14260 | Not Available | Positive | 2775986 - 2777812 | 67808.1 |
| acetoacetate metabolism transcriptional regulator atoc | BEN53_RS14265 | Not Available | Positive | 2777809 - 2779194 | 52128.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




