Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter yejo | BEN53_RS14105 | Not Available | Negative | 2744397 - 2746988 | 91114.0 |
| nitrate/nitrite response regulator protein narp | BEN53_RS14115 | Not Available | Positive | 2747308 - 2747955 | 23636.5 |
| cytochrome c-type biogenesis thiol:disulfide oxidoreductase ccmh | BEN53_RS14120 | Not Available | Negative | 2747990 - 2749042 | 39091.3 |
| thiol:disulfide interchange protein dsbe | BEN53_RS14125 | Not Available | Negative | 2749039 - 2749596 | 20810.1 |
| cytochrome c-type biogenesis heme lyase ccmf | BEN53_RS14130 | Not Available | Negative | 2749593 - 2751536 | 71361.5 |
| cytochrome c maturation protein ccme | BEN53_RS14135 | Not Available | Negative | 2751533 - 2752012 | 17699.4 |
| heme exporter protein ccmd | BEN53_RS14140 | Not Available | Negative | 2752009 - 2752218 | 7745.59 |
| heme exporter protein ccmc | BEN53_RS14145 | Not Available | Negative | 2752215 - 2752952 | 27886.9 |
| heme exporter protein ccmb | BEN53_RS14150 | Not Available | Negative | 2752994 - 2753656 | 23620.3 |
| cytochrome c biogenesis heme-transporting atpase ccma | BEN53_RS14155 | Not Available | Negative | 2753653 - 2754276 | 22955.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




