Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nupc/nupg family nucleoside cnt transporter | BEN53_RS13945 | Not Available | Negative | 2710903 - 2712153 | 43382.2 |
| ribosylpyrimidine nucleosidase | BEN53_RS13950 | Not Available | Negative | 2712253 - 2713194 | 33768.1 |
| transcriptional regulator yeil | BEN53_RS13955 | Not Available | Positive | 2713324 - 2714022 | 26842.6 |
| nupc/nupg family nucleoside cnt transporter | BEN53_RS13960 | Not Available | Negative | 2714091 - 2715341 | 43434.4 |
| pseudouridine-5'-phosphate glycosidase | BEN53_RS13965 | Not Available | Negative | 2715435 - 2716373 | 32947.8 |
| pseudouridine kinase | BEN53_RS13970 | Not Available | Negative | 2716361 - 2717302 | 33674.0 |
| pts fructose transporter subunit iibc | BEN53_RS13975 | Not Available | Negative | 2717726 - 2719417 | 57508.7 |
| 1-phosphofructokinase | BEN53_RS13980 | Not Available | Negative | 2719434 - 2720372 | 33757.6 |
| fused pts fructose transporter subunit iia/hpr protein | BEN53_RS13985 | Not Available | Negative | 2720372 - 2721502 | 39650.2 |
| sugar efflux transporter setb | BEN53_RS13990 | Not Available | Positive | 2721870 - 2723051 | 42696.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




