Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | BEN53_RS13885 | Not Available | Negative | 2698583 - 2698972 | 14418.2 |
| l-serine ammonia-lyase | BEN53_RS13890 | Not Available | Negative | 2698974 - 2700326 | 49160.4 |
| phosphoserine phosphatase serb | BEN53_RS13895 | Not Available | Positive | 2700537 - 2701424 | 33476.5 |
| mfs transporter | BEN53_RS13900 | Not Available | Positive | 2701457 - 2702779 | 48777.4 |
| catecholate siderophore receptor cira | BEN53_RS13905 | Not Available | Negative | 2702838 - 2704829 | 73885.5 |
| lysine-specific permease | BEN53_RS13915 | Not Available | Negative | 2705122 - 2706591 | 53536.9 |
| dna-binding transcriptional regulator yeie | BEN53_RS13925 | Not Available | Negative | 2706796 - 2707677 | 32725.7 |
| yeih family protein | BEN53_RS13930 | Not Available | Positive | 2707776 - 2708825 | 36884.3 |
| deoxyribonuclease iv | BEN53_RS13935 | Not Available | Positive | 2708899 - 2709756 | 31463.2 |
| sugar kinase | BEN53_RS13940 | Not Available | Positive | 2709759 - 2710847 | 39702.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




